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TitleThe power of homozygosity mapping-guided whole exome sequencing in a Saudi LCA population.
Abstract Nr.1055
PurposeLeber congenital amaurosis is the most severe autosomal recessive retinal dystrophy (RD) accounting for 5% of childhood blindness. Thus far 70% of LCA cases have been explained by 21 known genes. Here, we aim to identify the genetic cause in 15 Saudi-Arabian families with a total of 20 probands (8 females and 12 males), and age of 2-9 years, displaying severe vision impairment, nystagmus, sluggish or near-absent pupillary responses, oculodigital sign, and severely reduced or extinguished electroretinogram (ERG).
MethodsOur approach consisted of homozygosity mapping followed by targeted next generation sequencing (NGS) or Sanger sequencing, combined or not with whole exome sequencing (WES).
ResultsOverall, we identified 13 putative pathogenic mutations in 10 known IRD genes in 14/15 (93.3%) of the studied families, six of which are novel. Eight were known LCA genes: CRB1 (3/15,20%), RPGRIP1 (2/15,13.3%), SPATA7 (2/15,13.3 %) and MERTK, RDH12, CABP4, CEP290 (1/15, 6.7% for the latter four).Two genes are known in other forms of IRD (1/15, 6.7% for each): ATF6 with recessive achromatopsia and ALMS1 with Alström syndrome. The recurrent RPGRIP1 mutation c.1007delA p.(Glu370Asnfs*5) was consistent with a potential founder effect in the Saudi population (Khan et al. 2014).
ConclusionThe power of homozygosity mapping-guided WES revealed pathogenic mutations in 93.3% of the studied families. This might offer therapeutic perspectives beside the diagnostic-prognostic values and reproductive options.
Conflict of interestNo
Authors 1
Last nameALMOALLEM
InitialsB
DepartmentCtr.for Med.Genetics,Ghent University
CityGhent
Authors 2
Last nameVan Schil
InitialsK
DepartmentCtr.for Med.Genetics,Ghent University
CityGhent
Authors 3
Last nameJeddawi
InitialsL
DepartmentDhahran Eye Specialist Hospital
CityDhahran
Authors 4
Last nameRosseel
InitialsT
DepartmentCtr.for Med.Genetics,Ghent University
CityGhent
Authors 5
Last nameCoppieters
InitialsF
DepartmentCtr.for Med.Genetics,Ghent University
CityGhent
Authors 6
Last nameDe Baere
InitialsE
DepartmentCtr.for Med.Genetics,Ghent University
CityGhent
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