Title | The power of homozygosity mapping-guided whole exome sequencing in a Saudi LCA population. |
Abstract Nr. | 1055 |
Purpose | Leber congenital amaurosis is the most severe autosomal recessive retinal dystrophy (RD) accounting for 5% of childhood blindness. Thus far 70% of LCA cases have been explained by 21 known genes. Here, we aim to identify the genetic cause in 15 Saudi-Arabian families with a total of 20 probands (8 females and 12 males), and age of 2-9 years, displaying severe vision impairment, nystagmus, sluggish or near-absent pupillary responses, oculodigital sign, and severely reduced or extinguished electroretinogram (ERG). |
Methods | Our approach consisted of homozygosity mapping followed by targeted next generation sequencing (NGS) or Sanger sequencing, combined or not with whole exome sequencing (WES). |
Results | Overall, we identified 13 putative pathogenic mutations in 10 known IRD genes in 14/15 (93.3%) of the studied families, six of which are novel. Eight were known LCA genes: CRB1 (3/15,20%), RPGRIP1 (2/15,13.3%), SPATA7 (2/15,13.3 %) and MERTK, RDH12, CABP4, CEP290 (1/15, 6.7% for the latter four).Two genes are known in other forms of IRD (1/15, 6.7% for each): ATF6 with recessive achromatopsia and ALMS1 with Alström syndrome. The recurrent RPGRIP1 mutation c.1007delA p.(Glu370Asnfs*5) was consistent with a potential founder effect in the Saudi population (Khan et al. 2014). |
Conclusion | The power of homozygosity mapping-guided WES revealed pathogenic mutations in 93.3% of the studied families. This might offer therapeutic perspectives beside the diagnostic-prognostic values and reproductive options. |
Conflict of interest | No |
Last name | ALMOALLEM |
Initials | B |
Department | Ctr.for Med.Genetics,Ghent University |
City | Ghent |
Last name | Van Schil |
Initials | K |
Department | Ctr.for Med.Genetics,Ghent University |
City | Ghent |
Last name | Jeddawi |
Initials | L |
Department | Dhahran Eye Specialist Hospital |
City | Dhahran |
Last name | Rosseel |
Initials | T |
Department | Ctr.for Med.Genetics,Ghent University |
City | Ghent |
Last name | Coppieters |
Initials | F |
Department | Ctr.for Med.Genetics,Ghent University |
City | Ghent |
Last name | De Baere |
Initials | E |
Department | Ctr.for Med.Genetics,Ghent University |
City | Ghent |